SETTER - pairwise RNA alignment
MultiSETTER - multiple RNA alignment
query
  • 1st RNA molecule
  • PDB code , chain ID
    or
    upload PDB file , chain ID
  • 2nd RNA molecule or batch of RNA molecules
  • PDB code , chain ID
    or
    upload PDB file , chain ID
    use up to date PDB files  
  • Parameters

References

  • Hoksza D., Svozil D. Efficient RNA pairwise structure comparison by SETTER method. Bioinformatics, 2012, 28 (14), 1858-1864.
    DOI: 10.1093/bioinformatics/bts301

  • Čech P., Svozil D., Hoksza D. SETTER: Web server for RNA structure comparison. Nucleic Acids Research, 2012, 40 (W1), W42-W48.
    DOI: 10.1093/nar/gks560

  • Hoksza D., Svozil D. Multiple 3D RNA Structure Superposition Using Neighbor Joining, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2014, PP(99).
    DOI: 10.1109/TCBB.2014.2351810