query
results
  • 1st RNA molecule
  • PDB code , chain ID
    or
    upload PDB file , chain ID
  • 2nd RNA molecule | batch of RNA molecules
  • PDB code , chain ID
    or
    upload PDB file , chain ID
    place PDB codes (ex. 3rg5:b 3tup:t 3sd1:a)
    or
    upload file with PDB codes
    use up to date PDB files
  • Parameters
  • neck shift identical pair nt type modifier
    pair distance threshold top k gssu
    no loop - stem percentage early termination

     statistics in the result page will be valid only for default parameters values
1st RNA molecule
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2nd RNA molecule
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Show aligned GSSU pairs     
Show aligned residues
Show nearest neighbours in distance between:
  and  Å 

References

  • Hoksza, D., Svozil, D. Efficient RNA pairwise structure comparison by SETTER method. Bioinformatics, 2012, 28 (14), 1858-1864.
    DOI: 10.1093/bioinformatics/bts301

  • Čech, P., Svozil, D., Hoksza, D. SETTER: Web server for RNA structure comparison. Nucleic Acids Research, 2012, 40 (W1), W42-W48.
    DOI: 10.1093/nar/gks560